Package: murasaki-mpi (1.68.6-13 and others)

[ Source: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Other Packages Related to murasaki-mpi

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-regex1.74.0-icu72

  virtual package provided by libboost-regex1.74.0

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libopenmpi3 (>= 4.1.4)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Download murasaki-mpi

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.68.6-13+b3	626.1 kB	4,010.0 kB	[list of files]
arm64	1.68.6-13+b3	548.8 kB	4,114.0 kB	[list of files]
armel	1.68.6-13+b3	409.5 kB	2,948.0 kB	[list of files]
armhf	1.68.6-13+b3	418.0 kB	2,116.0 kB	[list of files]
i386	1.68.6-13+b3	636.0 kB	3,740.0 kB	[list of files]
mips64el	1.68.6-13+b3	592.0 kB	5,394.0 kB	[list of files]
mipsel	1.68.6-13+b3	580.4 kB	4,750.0 kB	[list of files]
ppc64el	1.68.6-13+b2	626.2 kB	5,202.0 kB	[list of files]
s390x	1.68.6-13+b2	557.7 kB	4,266.0 kB	[list of files]