Package: libtfbs-perl (0.7.1+ds-4 and others)

[ Source: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tags: Software Development: Perl Development, Libraries, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

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Download libtfbs-perl

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.1+ds-1	229.0 kB	992.0 kB	[list of files]
amd64	0.7.1+ds-4+b1	216.4 kB	981.0 kB	[list of files]
arm64	0.7.1+ds-4+b1	216.7 kB	1,029.0 kB	[list of files]
armel	0.7.1+ds-4+b1	217.6 kB	981.0 kB	[list of files]
armhf	0.7.1+ds-4+b1	215.8 kB	977.0 kB	[list of files]
hppa (unofficial port)	0.7.1+ds-4	219.0 kB	981.0 kB	[list of files]
i386	0.7.1+ds-4+b1	217.0 kB	981.0 kB	[list of files]
ia64 (unofficial port)	0.7.1+ds-3	218.4 kB	985.0 kB	[list of files]
m68k (unofficial port)	0.7.1+ds-4+b1	215.6 kB	981.0 kB	[list of files]
mips64el	0.7.1+ds-4+b1	216.5 kB	1,030.0 kB	[list of files]
ppc64 (unofficial port)	0.7.1+ds-4+b1	217.6 kB	1,029.0 kB	[list of files]
ppc64el	0.7.1+ds-4+b1	217.3 kB	1,029.0 kB	[list of files]
riscv64	0.7.1+ds-4+b1	216.6 kB	977.0 kB	[list of files]
s390x	0.7.1+ds-4+b1	216.5 kB	981.0 kB	[list of files]
sh4 (unofficial port)	0.7.1+ds-4+b1	219.2 kB	1,029.0 kB	[list of files]
sparc64 (unofficial port)	0.7.1+ds-4+b1	216.4 kB	1,991.0 kB	[list of files]
x32 (unofficial port)	0.7.1+ds-4+b1	216.4 kB	981.0 kB	[list of files]