Package: hilive (2.0a-5)

[ Source: hilive  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

realtime alignment of Illumina reads

HiLive is a read mapping tool that maps Illumina HiSeq (or comparable) reads to a reference genome right in the moment when they are produced. This means, read mapping is finished as soon as the sequencer is finished generating the data.

Other Packages Related to hilive

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.38) [not sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64, i386, mips64el, ppc64, riscv64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [sh4]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: liblz4-1 (>= 0.0~r113)

  Fast LZ compression algorithm library - runtime

• dep: libstdc++6 (>= 13.1) [m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [not m68k]

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

Download hilive

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	558.5 kB	2,553.0 kB	[list of files]
arm64	494.1 kB	2,433.0 kB	[list of files]
armel	473.6 kB	2,323.0 kB	[list of files]
armhf	493.0 kB	1,643.0 kB	[list of files]
hppa (unofficial port)	501.2 kB	2,421.0 kB	[list of files]
i386	568.8 kB	2,675.0 kB	[list of files]
m68k (unofficial port)	393.2 kB	2,223.0 kB	[list of files]
mips64el	499.5 kB	3,481.0 kB	[list of files]
ppc64 (unofficial port)	521.0 kB	3,265.0 kB	[list of files]
ppc64el	535.3 kB	3,073.0 kB	[list of files]
riscv64	563.5 kB	1,973.0 kB	[list of files]
s390x	527.9 kB	2,589.0 kB	[list of files]
sh4 (unofficial port)	486.6 kB	2,113.0 kB	[list of files]
sparc64 (unofficial port)	439.3 kB	3,151.0 kB	[list of files]
x32 (unofficial port)	529.6 kB	2,391.0 kB	[list of files]