Paket: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) [debports]
Links für t-coffee
Debian-Ressourcen:
Quellcode-Paket herunterladen:
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Externe Ressourcen:
- Homepage [www.tcoffee.org]
Ähnliche Pakete:
Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information
T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.
Andere Pakete mit Bezug zu t-coffee
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auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- rec: clustalo
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- rec: clustalw
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- rec: dialign-tx
- Segmentbasiertes multiples Sequenzalignment
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- rec: fsa
- Fast Statistical Alignment of protein, RNA or DNA sequences
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- rec: kalign
- Globales und fortschreitendes multiples Sequenzalignment
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- rec: libxml-simple-perl
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- rec: mustang
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- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- rec: poa
- Partial Order Alignment for multiple sequence alignment
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- rec: prank
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- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- rec: proda
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- rec: tm-align
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- sug: boxshade
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- sug: seaview
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- sug: t-coffee-examples
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t-coffee herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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sparc64 (inoffizielle Portierung) | 835,5 kB | 3.150,0 kB | [Liste der Dateien] |