套件：t-coffee（13.45.0.4846264+really13.41.0.28bdc39+dfsg-1） [debports]
Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information
T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.
其他與 t-coffee 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- rec: amap-align
- Protein multiple alignment by sequence annealing
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- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: dialign-tx
- Segment-based multiple sequence alignment
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- rec: fsa
- Fast Statistical Alignment of protein, RNA or DNA sequences
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: libsoap-lite-perl
- Perl implementation of a SOAP client and server
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- rec: libxml-simple-perl
- Perl module for reading and writing XML
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: mustang
- multiple structural alignment of proteins
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- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- rec: poa
- Partial Order Alignment for multiple sequence alignment
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- rec: prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
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- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- rec: proda
- multiple alignment of protein sequences
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- rec: tm-align
- structural alignment of proteins
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- sug: boxshade
- Pretty-printing of multiple sequence alignments
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- sug: seaview
- Multiplatform interface for sequence alignment and phylogeny
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- sug: t-coffee-examples
- annotated examples for the use of T-Coffee