Пакет: augustus (3.3.2+dfsg-2)

[ Източник: augustus  ]

gene prediction in eukaryotic genomes

AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.

Етикети: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Наука: science::calculation, scope::utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, works-with::biological-sequence

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• dep: augustus-data

  data files for AUGUSTUS

• dep: libbamtools2.5.1

  dynamic library for manipulating BAM (genome alignment) files

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15)

  GNU C Library: Shared libraries
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• dep: libcurl3-nss (>= 7.23.1)

  easy-to-use client-side URL transfer library (NSS flavour)

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: liblzma5 (>= 5.1.1alpha+20110809)

  XZ-format compression library

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libssl1.1 (>= 1.1.0)

  Secure Sockets Layer toolkit - shared libraries

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	1 134,7 кБ	4 787,0 кБ	[списък на файловете]