Пакет: kallisto (0.46.2+dfsg-2)

[ Източник: kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Други пакети, свързани с kallisto

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Изтегляне на kallisto

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	236,4 кБ	706,0 кБ	[списък на файловете]
arm64	211,4 кБ	626,0 кБ	[списък на файловете]
armel	203,0 кБ	600,0 кБ	[списък на файловете]
armhf	210,7 кБ	456,0 кБ	[списък на файловете]
i386	256,5 кБ	740,0 кБ	[списък на файловете]
mips64el	211,9 кБ	774,0 кБ	[списък на файловете]
mipsel	218,3 кБ	758,0 кБ	[списък на файловете]
ppc64el	237,3 кБ	786,0 кБ	[списък на файловете]
s390x	215,3 кБ	714,0 кБ	[списък на файловете]