Paket: kallisto (0.46.2+dfsg-2)

[ Quellcode: kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Andere Pakete mit Bezug zu kallisto

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate

• dep: libstdc++6 (>= 6)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	236,4 kB	706,0 kB	[Liste der Dateien]
arm64	211,4 kB	626,0 kB	[Liste der Dateien]
armel	203,0 kB	600,0 kB	[Liste der Dateien]
armhf	210,7 kB	456,0 kB	[Liste der Dateien]
i386	256,5 kB	740,0 kB	[Liste der Dateien]
mips64el	211,9 kB	774,0 kB	[Liste der Dateien]
mipsel	218,3 kB	758,0 kB	[Liste der Dateien]
ppc64el	237,3 kB	786,0 kB	[Liste der Dateien]
s390x	215,3 kB	714,0 kB	[Liste der Dateien]