软件包：kallisto（0.46.2+dfsg-2）

[ 源代码： kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

其他与 kallisto 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 6)

  GNU 标准 C++ 库，第3版

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

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下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	236.4 kB	706.0 kB	[文件列表]
arm64	211.4 kB	626.0 kB	[文件列表]
armel	203.0 kB	600.0 kB	[文件列表]
armhf	210.7 kB	456.0 kB	[文件列表]
i386	256.5 kB	740.0 kB	[文件列表]
mips64el	211.9 kB	774.0 kB	[文件列表]
mipsel	218.3 kB	758.0 kB	[文件列表]
ppc64el	237.3 kB	786.0 kB	[文件列表]
s390x	215.3 kB	714.0 kB	[文件列表]