Package: kallisto (0.46.2+dfsg-2)

[ Source: kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Other Packages Related to kallisto

• dep: libc6 (>= 2.29)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

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Architecture	Package Size	Installed Size	Files
amd64	236.4 kB	706.0 kB	[list of files]
arm64	211.4 kB	626.0 kB	[list of files]
armel	203.0 kB	600.0 kB	[list of files]
armhf	210.7 kB	456.0 kB	[list of files]
i386	256.5 kB	740.0 kB	[list of files]
mips64el	211.9 kB	774.0 kB	[list of files]
mipsel	218.3 kB	758.0 kB	[list of files]
ppc64el	237.3 kB	786.0 kB	[list of files]
s390x	215.3 kB	714.0 kB	[list of files]