套件：kallisto（0.46.2+dfsg-2）

[ 原始碼： kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

其他與 kallisto 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

下載 kallisto

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	236。4 kB	706。0 kB	[檔案列表]
arm64	211。4 kB	626。0 kB	[檔案列表]
armel	203。0 kB	600。0 kB	[檔案列表]
armhf	210。7 kB	456。0 kB	[檔案列表]
i386	256。5 kB	740。0 kB	[檔案列表]
mips64el	211。9 kB	774。0 kB	[檔案列表]
mipsel	218。3 kB	758。0 kB	[檔案列表]
ppc64el	237。3 kB	786。0 kB	[檔案列表]
s390x	215。3 kB	714。0 kB	[檔案列表]