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[ 原始碼： jellyfish  ]

套件：libjellyfish-perl（2.3.1-4 以及其他的）

libjellyfish-perl 的相關連結

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count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

標籤: 軟體開發: Perl 開發, 函式庫, 實做語言: implemented-in::c, implemented-in::perl, 角色: 開發用函式庫

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下載 libjellyfish-perl

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
amd64 2.3.1-4 55。4 kB176。0 kB [檔案列表]
arm64 2.3.1-4 52。5 kB228。0 kB [檔案列表]
hppa （非官方移植版） 2.3.1-2+b1 65。9 kB219。0 kB [檔案列表]
ia64 （非官方移植版） 2.3.0-12 67。0 kB299。0 kB [檔案列表]
mips64el 2.3.1-4 50。5 kB233。0 kB [檔案列表]
ppc64el 2.3.1-4 55。5 kB228。0 kB [檔案列表]
riscv64 2.3.1-4 56。1 kB156。0 kB [檔案列表]