套件：libjellyfish-perl（2.3.0-15 以及其他的）

[ 原始碼： jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

標籤: 軟體開發: Perl 開發, 函式庫, 實做語言: implemented-in::c, implemented-in::perl, 角色: 開發用函式庫

其他與 libjellyfish-perl 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: perl (>= 5.36.0-7)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.36.0

  本虛擬套件由這些套件填實： perl-base

下載 libjellyfish-perl

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	2.3.0-15+b3	53。0 kB	172。0 kB	[檔案列表]
arm64	2.3.0-15+b3	48。4 kB	228。0 kB	[檔案列表]
armel	2.3.0-15+b3	54。4 kB	174。0 kB	[檔案列表]
armhf	2.3.0-15+b3	55。2 kB	138。0 kB	[檔案列表]
i386	2.3.0-15+b3	62。1 kB	186。0 kB	[檔案列表]
mips64el	2.3.0-15+b3	47。5 kB	234。0 kB	[檔案列表]
ppc64el	2.3.0-15+b3	53。3 kB	228。0 kB	[檔案列表]