Paket: libjellyfish-perl (2.3.1-4 och andra)

[ Källkod: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Märken: Software Development: Perl Development, Bibliotek, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

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• dep: libc6 (>= 2.34) [hppa]

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  dep: libc6 (>= 2.38) [ej hppa, ia64]

• dep: libc6.1 (>= 2.31) [ia64]

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• dep: libgcc-s1 (>= 3.0) [ej hppa, ia64]

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• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: libunwind8 [ia64]

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• dep: perl [ia64]

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  dep: perl (>= 5.38.2-2) [hppa]

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• dep: perlapi-5.32.1 [ia64]

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• dep: perlapi-5.38.2 [hppa]

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• dep: perlapi-5.40.1 [ej hppa, ia64]

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Hämta libjellyfish-perl

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.3.1-4+b1	55,6 kbyte	177,0 kbyte	[filförteckning]
arm64	2.3.1-4+b1	52,5 kbyte	229,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	2.3.1-2+b1	65,9 kbyte	219,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	2.3.0-12	67,0 kbyte	299,0 kbyte	[filförteckning]
mips64el	2.3.1-4+b1	50,8 kbyte	234,0 kbyte	[filförteckning]
ppc64el	2.3.1-4+b1	55,8 kbyte	229,0 kbyte	[filförteckning]
riscv64	2.3.1-4+b1	56,4 kbyte	157,0 kbyte	[filförteckning]