[ trixie ]
[ sid ]
[ 原始碼: bifrost ]
套件:libbifrost0(1.3.1-1 以及其他的)
library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
其他與 libbifrost0 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha, arm64, ia64]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
- dep: libgcc-s1 (>= 4.3) [sparc64]
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- dep: libstdc++6 (>= 13.1) [除 arm64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [arm64]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
下載 libbifrost0
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
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alpha (非官方移植版) | 1.3.1-1 | 388。7 kB | 1,526。0 kB | [檔案列表] |
amd64 | 1.3.1-1 | 417。9 kB | 1,436。0 kB | [檔案列表] |
arm64 | 1.3.1-1+b1 | 384。9 kB | 1,325。0 kB | [檔案列表] |
ia64 (非官方移植版) | 1.3.1-1 | 509。9 kB | 2,582。0 kB | [檔案列表] |
mips64el | 1.3.1-1 | 350。8 kB | 1,504。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 1.3.1-1 | 428。4 kB | 1,773。0 kB | [檔案列表] |
ppc64el | 1.3.1-1 | 435。0 kB | 1,644。0 kB | [檔案列表] |
riscv64 | 1.3.1-1 | 424。2 kB | 1,128。0 kB | [檔案列表] |
s390x | 1.3.1-1 | 430。1 kB | 1,524。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 1.3.1-1 | 354。0 kB | 2,125。0 kB | [檔案列表] |