Pakket: libbifrost0 (1.3.1-1 en anderen)

[ Bron: bifrost  ]

library for parallel construction, indexing and querying of de Bruijn graphs

Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere aan libbifrost0 gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, arm64, ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libstdc++6 (>= 13.1) [niet arm64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

libbifrost0 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.3.1-1	388,7 kB	1.526,0 kB	[overzicht]
amd64	1.3.1-1	417,9 kB	1.436,0 kB	[overzicht]
arm64	1.3.1-1+b1	384,9 kB	1.325,0 kB	[overzicht]
ia64 (unofficial port)	1.3.1-1	509,9 kB	2.582,0 kB	[overzicht]
mips64el	1.3.1-1	350,8 kB	1.504,0 kB	[overzicht]
ppc64 (unofficial port)	1.3.1-1	428,4 kB	1.773,0 kB	[overzicht]
ppc64el	1.3.1-1	435,0 kB	1.644,0 kB	[overzicht]
riscv64	1.3.1-1	424,2 kB	1.128,0 kB	[overzicht]
s390x	1.3.1-1	430,1 kB	1.524,0 kB	[overzicht]
sparc64 (unofficial port)	1.3.1-1	354,0 kB	2.125,0 kB	[overzicht]