套件：sra-toolkit（2.9.3+dfsg-1 以及其他的）
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
其他與 sra-toolkit 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6 (>= 2.14)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libfuse2 (>= 2.6)
- Filesystem in Userspace (library)
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- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: libkdf5-2
- hdf5 access to data in the INSDC Sequence Read Archives
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- dep: libmagic1 (>= 5.12)
- Recognize the type of data in a file using "magic" numbers - library
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- dep: libmbedcrypto3 (>= 2.13)
- lightweight crypto and SSL/TLS library - crypto library
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- dep: libmbedtls12 (>= 2.13)
- lightweight crypto and SSL/TLS library - tls library
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- dep: libmbedx509-0 (>= 2.0)
- lightweight crypto and SSL/TLS library - x509 certificate library
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- dep: libncbi-vdb2
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libncbi-wvdb2
- virtual layer update modul of ncbi-vdb library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libsz2
- Adaptive Entropy Coding library - SZIP
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- dep: libxml2 (>= 2.6.27)
- GNOME XML library
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- dep: zlib1g (>= 1:1.2.2)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: med-config (>= 2.1)
- Debian Med general config package