パッケージ: sra-toolkit (2.9.3+dfsg-1 など)
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
その他の sra-toolkit 関連パッケージ
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- dep: libbz2-1.0
- 高品質なブロックソートファイル圧縮器 - ランタイム
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- dep: libc6 (>= 2.14)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libfuse2 (>= 2.6)
- ユーザ空間ファイルシステム (ライブラリ)
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- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: libkdf5-2
- hdf5 access to data in the INSDC Sequence Read Archives
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- dep: libmagic1 (>= 5.12)
- 「マジック」ナンバーを使ったデータ形式認識 - ライブラリ
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- dep: libmbedcrypto3 (>= 2.13)
- lightweight crypto and SSL/TLS library - crypto library
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- dep: libmbedtls12 (>= 2.13)
- lightweight crypto and SSL/TLS library - tls library
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- dep: libmbedx509-0 (>= 2.0)
- lightweight crypto and SSL/TLS library - x509 certificate library
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- dep: libncbi-vdb2
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libncbi-wvdb2
- virtual layer update modul of ncbi-vdb library
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- dep: libstdc++6 (>= 5.2)
- GNU 標準 C++ ライブラリ v3
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- dep: libsz2
- Adaptive Entropy Coding library - SZIP
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- dep: libxml2 (>= 2.6.27)
- GNOME XML ライブラリ
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- dep: zlib1g (>= 1:1.2.2)
- 圧縮ライブラリ - ランタイム
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- rec: med-config (>= 2.1)
- Debian Med general config package