[ Källkod: maffilter ]
Paket: maffilter (1.3.1+dfsg-6 och andra)
Länkar för maffilter
Debianresurser:
Hämta källkodspaketet maffilter:
- [maffilter_1.3.1+dfsg-6.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-6.debian.tar.xz]
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Andreas Tille (QA-sida)
- Julien Dutheil (QA-sida)
- Pranav Ballaney (QA-sida)
Externa resurser:
- Hemsida [jydu.github.io]
Liknande paket:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
Andra paket besläktade med maffilter
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
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- dep: libbpp-core4t64 (>= 2.4.1)
- Bio++ Core library
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- dep: libbpp-phyl-omics3t64 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
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- dep: libbpp-phyl12t64 (>= 2.4.1)
- Bio++ Phylogenetic library
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- dep: libbpp-seq-omics3t64 (>= 2.4.1)
- Bio++ Sequence library: genomics components
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- dep: libbpp-seq12t64 (>= 2.4.1)
- Bio++ Sequence library
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- dep: libc6 (>= 2.34)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ej armel, armhf, riscv64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 13.1)
- GNU standardbibliotek v3 för C++
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)
Hämta maffilter
Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|---|
amd64 | 1.3.1+dfsg-6 | 259,5 kbyte | 1.308,0 kbyte | [filförteckning] |
arm64 | 1.3.1+dfsg-6+b1 | 238,6 kbyte | 1.369,0 kbyte | [filförteckning] |
armel | 1.3.1+dfsg-6 | 222,9 kbyte | 1.179,0 kbyte | [filförteckning] |
armhf | 1.3.1+dfsg-6 | 228,8 kbyte | 1.039,0 kbyte | [filförteckning] |
i386 | 1.3.1+dfsg-6 | 266,2 kbyte | 1.271,0 kbyte | [filförteckning] |
mips64el | 1.3.1+dfsg-6 | 225,2 kbyte | 1.489,0 kbyte | [filförteckning] |
ppc64el | 1.3.1+dfsg-6 | 254,5 kbyte | 1.432,0 kbyte | [filförteckning] |
riscv64 | 1.3.1+dfsg-6 | 248,2 kbyte | 1.176,0 kbyte | [filförteckning] |
s390x | 1.3.1+dfsg-6 | 247,8 kbyte | 1.320,0 kbyte | [filförteckning] |