Paket: maffilter (1.3.1+dfsg-6 och andra)

[ Källkod: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andra paket besläktade med maffilter

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libbpp-core4t64 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3t64 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12t64 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3t64 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12t64 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, riscv64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Hämta maffilter

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	1.3.1+dfsg-6	259,5 kbyte	1.308,0 kbyte	[filförteckning]
arm64	1.3.1+dfsg-6+b1	238,6 kbyte	1.369,0 kbyte	[filförteckning]
armel	1.3.1+dfsg-6	222,9 kbyte	1.179,0 kbyte	[filförteckning]
armhf	1.3.1+dfsg-6	228,8 kbyte	1.039,0 kbyte	[filförteckning]
i386	1.3.1+dfsg-6	266,2 kbyte	1.271,0 kbyte	[filförteckning]
mips64el	1.3.1+dfsg-6	225,2 kbyte	1.489,0 kbyte	[filförteckning]
ppc64el	1.3.1+dfsg-6	254,5 kbyte	1.432,0 kbyte	[filförteckning]
riscv64	1.3.1+dfsg-6	248,2 kbyte	1.176,0 kbyte	[filförteckning]
s390x	1.3.1+dfsg-6	247,8 kbyte	1.320,0 kbyte	[filförteckning]