Пакунок: jellyfish (2.3.1-4 and others)
Links for jellyfish
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [www.genome.umd.edu]
Similar packages:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Інші пакунки пов'язані з jellyfish
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- dep: libc6 (>= 2.34) [hppa]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.38) [not hppa, ia64]
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- dep: libc6.1 (>= 2.31) [ia64]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.0) [not hppa, ia64, riscv64]
- Допоміжна бібліотека GCC
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- Допоміжна бібліотека GCC
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- dep: libhts3 (>= 1.10) [ia64]
- C library for high-throughput sequencing data formats
- dep: libhts3 (>= 1.17) [hppa]
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- dep: libhts3t64 (>= 1.17) [not hppa, ia64]
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]
- count k-mers in DNA sequences (dynamic library of jellyfish)
- dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]
- dep: libjellyfish-2.0-2 (= 2.3.1-4+b1) [not hppa, ia64]
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- dep: libstdc++6 (>= 13.1) [hppa]
- Стандартна бібліотека C++ GNU, версії 3
- dep: libstdc++6 (>= 14) [not hppa, ia64]
- dep: libstdc++6 (>= 9) [ia64]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
Завантажити jellyfish
Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
---|---|---|---|---|
amd64 | 2.3.1-4+b1 | 788.6 kB | 2,527.0 kB | [список файлів] |
arm64 | 2.3.1-4+b1 | 709.1 kB | 2,511.0 kB | [список файлів] |
hppa (unofficial port) | 2.3.1-2+b1 | 682.7 kB | 2,079.0 kB | [список файлів] |
ia64 (unofficial port) | 2.3.0-12 | 847.7 kB | 5,022.0 kB | [список файлів] |
mips64el | 2.3.1-4+b1 | 665.5 kB | 3,082.0 kB | [список файлів] |
ppc64el | 2.3.1-4+b1 | 746.0 kB | 2,895.0 kB | [список файлів] |
riscv64 | 2.3.1-4+b1 | 755.3 kB | 1,963.0 kB | [список файлів] |