软件包:fasta3(36.3.8i.14-Nov-2020-1 以及其他的)
fasta3 的相关链接
Debian 的资源:
下载源码包 fasta3:
- [fasta3_36.3.8i.14-Nov-2020-1.dsc]
- [fasta3_36.3.8i.14-Nov-2020.orig.tar.gz]
- [fasta3_36.3.8i.14-Nov-2020-1.debian.tar.xz]
维护小组:
外部的资源:
- 主页 [fasta.bioch.virginia.edu]
相似软件包:
tools for searching collections of biological sequences
The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
* Protein - Protein-protein FASTA - Protein-protein Smith-Waterman (ssearch) - Global Protein-protein (Needleman-Wunsch) (ggsearch) - Global/Local protein-protein (glsearch) - Protein-protein with unordered peptides (fasts) - Protein-protein with mixed peptide sequences (fastf)
* Nucleotide - Nucleotide-Nucleotide (DNA/RNA fasta) - Ordered Nucleotides vs Nucleotide (fastm) - Un-ordered Nucleotides vs Nucleotide (fasts)
* Translated - Translated DNA (with frameshifts, e.g. ESTs) vs Proteins (fastx/fasty) - Protein vs Translated DNA (with frameshifts) (tfastx/tfasty) - Peptides vs Translated DNA (tfasts)
* Statistical Significance - Protein vs Protein shuffle (prss) - DNA vs DNA shuffle (prss) - Translated DNA vs Protein shuffle (prfx)
* Local Duplications - Local Protein alignments (lalign) - Plot Protein alignment "dot-plot" (plalign) - Local DNA alignments (lalign) - Plot DNA alignment "dot-plot" (plalign)
This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.
其他与 fasta3 有关的软件包
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- dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.36) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6.1-udeb
- dep: libc6.1 (>= 2.36) [ia64]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: r-base-core
- GNU R core of statistical computation and graphics system
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- sug: bedtools
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- sug: libdbi-perl
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- sug: libhtml-tableextract-perl
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- sug: libjson-perl
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- sug: liburi-encode-perl
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- sug: libwww-perl
- simple and consistent interface to the world-wide web
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- sug: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
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- sug: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- sug: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- sug: python3-mysqldb
- Python interface to MySQL
下载 fasta3
硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
---|---|---|---|---|
alpha (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 907.4 kB | 7,534.0 kB | [文件列表] |
amd64 | 36.3.8i.14-Nov-2020-1 | 902.2 kB | 6,970.0 kB | [文件列表] |
arm64 | 36.3.8i.14-Nov-2020-1 | 805.2 kB | 6,702.0 kB | [文件列表] |
armel | 36.3.8i.14-Nov-2020-1 | 807.9 kB | 6,924.0 kB | [文件列表] |
armhf | 36.3.8i.14-Nov-2020-1 | 771.9 kB | 5,324.0 kB | [文件列表] |
hppa (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 864.1 kB | 6,245.0 kB | [文件列表] |
i386 | 36.3.8i.14-Nov-2020-1 | 853.3 kB | 6,924.0 kB | [文件列表] |
ia64 (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 1,075.0 kB | 11,899.0 kB | [文件列表] |
m68k (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 755.2 kB | 5,887.0 kB | [文件列表] |
mips64el | 36.3.8i.14-Nov-2020-1 | 809.3 kB | 6,742.0 kB | [文件列表] |
ppc64 (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 872.1 kB | 7,875.0 kB | [文件列表] |
ppc64el | 36.3.8i.14-Nov-2020-1 | 884.6 kB | 8,238.0 kB | [文件列表] |
riscv64 | 36.3.8i.14-Nov-2020-1+b1 | 1,005.6 kB | 5,915.0 kB | [文件列表] |
s390x | 36.3.8i.14-Nov-2020-1 | 826.1 kB | 6,836.0 kB | [文件列表] |
sh4 (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 929.0 kB | 6,336.0 kB | [文件列表] |
sparc64 (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 895.1 kB | 18,263.0 kB | [文件列表] |
x32 (非官方移植版) | 36.3.8i.14-Nov-2020-1 | 884.2 kB | 6,748.0 kB | [文件列表] |