Pakket: gmap (2021-12-17+ds-3)

[ Bron: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	11.077,9 kB	89.482,0 kB	[overzicht]
arm64	6.950,3 kB	58.950,0 kB	[overzicht]
armel	5.407,5 kB	44.524,0 kB	[overzicht]
armhf	5.788,3 kB	42.476,0 kB	[overzicht]
i386	6.086,9 kB	43.904,0 kB	[overzicht]
mips64el	5.331,8 kB	55.440,0 kB	[overzicht]
mipsel	5.324,2 kB	46.108,0 kB	[overzicht]
ppc64el	7.299,8 kB	60.998,0 kB	[overzicht]