Paket: skesa (2.4.0-6 ve diğerleri)

[ Kaynak: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

skesa ile İlgili Diğer Paketler

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [x32 değil]

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0) [x32 değil]

  program options library for C++

• dep: libboost-timer1.83.0 (>= 1.83.0) [x32 değil]

  C++ wall clock and CPU process timers

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]

  Paket mevcut değil

• dep: libncbi-vdb3 (>= 3.0.2+dfsg) [x32 değil]

  libraries for using data in the INSDC Sequence Read Archives

• dep: libngs-c++3 (>= 3.0.3+dfsg) [x32 değil]

  Next Generation Sequencing language Bindings (C++ runtime)

• dep: libstdc++6 (>= 12.2.0-9) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [amd64]

  dep: libstdc++6 (>= 14) [arm64]

• dep: zlib1g (>= 1:1.1.4) [x32]

  compression library - runtime

skesa indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.4.0-6+b2	558,0 kB	2.350,0 kB	[dosya listesi]
arm64	2.4.0-6+b3	568,5 kB	2.230,0 kB	[dosya listesi]
x32 (resmi olmayan port)	2.4.0-4	631,9 kB	2.448,0 kB	[dosya listesi]