Пакет: skesa (2.4.0-6 и други)

[ Източник: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Други пакети, свързани с skesa

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [не x32]

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0) [не x32]

  program options library for C++

• dep: libboost-timer1.83.0 (>= 1.83.0) [не x32]

  C++ wall clock and CPU process timers

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]

  Пакетът не е наличен

• dep: libncbi-vdb3 (>= 3.0.2+dfsg) [не x32]

  libraries for using data in the INSDC Sequence Read Archives

• dep: libngs-c++3 (>= 3.0.3+dfsg) [не x32]

  Next Generation Sequencing language Bindings (C++ runtime)

• dep: libstdc++6 (>= 12.2.0-9) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [amd64]

  dep: libstdc++6 (>= 14) [arm64]

• dep: zlib1g (>= 1:1.1.4) [x32]

  compression library - runtime

Изтегляне на skesa

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	2.4.0-6+b2	558,0 кБ	2 350,0 кБ	[списък на файловете]
arm64	2.4.0-6+b3	568,5 кБ	2 230,0 кБ	[списък на файловете]
x32 (неофициална архитектура)	2.4.0-4	631,9 кБ	2 448,0 кБ	[списък на файловете]