Balík: skesa (2.4.0-6 a iné)

[ Zdroj: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Ostatné balíky súvisiace s balíkom skesa

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [nie x32]

  knižnica Boost.Iostreams

• dep: libboost-program-options1.83.0 (>= 1.83.0) [nie x32]

  knižnica volieb programu pre C++

• dep: libboost-timer1.83.0 (>= 1.83.0) [nie x32]

  hodiny a časovače procesov CPU pre C++

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]

  Balík nie je dostupný

• dep: libncbi-vdb3 (>= 3.0.2+dfsg) [nie x32]

  libraries for using data in the INSDC Sequence Read Archives

• dep: libngs-c++3 (>= 3.0.3+dfsg) [nie x32]

  Next Generation Sequencing language Bindings (C++ runtime)

• dep: libstdc++6 (>= 12.2.0-9) [x32]

  štandardná knižnica C++ GNU v3

  dep: libstdc++6 (>= 13.1) [amd64]

  dep: libstdc++6 (>= 14) [arm64]

• dep: zlib1g (>= 1:1.1.4) [x32]

  komprimačná knižnica - dynamická verzia

Stiahnuť skesa

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	2.4.0-6+b2	558.0 kB	2,350.0 kB	[zoznam súborov]
arm64	2.4.0-6+b3	568.5 kB	2,230.0 kB	[zoznam súborov]
x32 (neoficiálny port)	2.4.0-4	631.9 kB	2,448.0 kB	[zoznam súborov]