Paket: minia (3.2.6-4 ve diğerleri)

[ Kaynak: minia  ]

short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

minia ile İlgili Diğer Paketler

• dep: bc

  GNU bc arbitrary precision calculator language

• dep: libc6 (>= 2.24) [sh4]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.34) [alpha, ia64, m68k, sh4 değil]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgatbcore3 (>= 1.4.2) [amd64]

  dynamic library of the Genome Analysis Toolbox

  dep: libgatbcore3 (>= 1.4.2+dfsg) [amd64, m68k, sh4 değil]

• dep: libgcc-s1 (>= 3.0) [hppa, ia64, m68k, sh4 değil]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:4.2) [sh4]

  Paket mevcut değil

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paket mevcut değil

• dep: libhdf5-103-1 [hppa]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [alpha, ia64]

  HDF5 C runtime files - serial version

• dep: libhdf5-310 (>= 1.14.3) [alpha, hppa, ia64, m68k, sh4 değil]

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [hppa, m68k, sh4 değil]

  dep: libstdc++6 (>= 5.2) [m68k, sh4]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g [m68k, sh4 değil]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.4) [m68k, sh4]

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: bandage

  Bioinformatics Application for Navigating De novo Assembly Graphs Easily

minia indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	3.2.6-4+b1	389,1 kB	827,0 kB	[dosya listesi]
amd64	3.2.6-4+b2	395,5 kB	753,0 kB	[dosya listesi]
arm64	3.2.6-4+b3	386,0 kB	825,0 kB	[dosya listesi]
hppa (resmi olmayan port)	3.2.6-2	400,6 kB	744,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	3.2.6-4+b1	400,4 kB	941,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.6906-2	173,6 kB	298,0 kB	[dosya listesi]
mips64el	3.2.6-4+b2	386,6 kB	844,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	3.2.6-4+b2	391,5 kB	825,0 kB	[dosya listesi]
ppc64el	3.2.6-4+b2	394,3 kB	825,0 kB	[dosya listesi]
riscv64	3.2.6-4+b2	389,3 kB	677,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.6906-2	192,8 kB	291,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	3.2.6-4+b2	379,5 kB	2.431,0 kB	[dosya listesi]
x32 (resmi olmayan port)	3.2.6-4+b2	394,9 kB	711,0 kB	[dosya listesi]