Paket: bandage (0.9.0-2 ve diğerleri)

[ Kaynak: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Etiketler: Arayüz Araç Takımı: Qt

bandage ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34) [alpha, arm64, ia64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 4.0) [arm64, hppa, ia64, m68k, mips64el, riscv64 değil]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [arm64, ia64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgl1 [sparc64]

  Vendor neutral GL dispatch library -- legacy GL support

• dep: libqt5core5t64 (>= 5.15.1)

  Qt 5 core module

• dep: libqt5gui5t64 (>= 5.8.0)

  Qt 5 GUI module

  ya da libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5t64 (>= 5.15.1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

bandage indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	0.9.0-2+b1	914,8 kB	2.722,0 kB	[dosya listesi]
amd64	0.9.0-2+b1	964,0 kB	2.328,0 kB	[dosya listesi]
arm64	0.9.0-2+b2	902,9 kB	2.338,0 kB	[dosya listesi]
armel	0.9.0-2+b1	874,9 kB	2.109,0 kB	[dosya listesi]
armhf	0.9.0-2+b1	876,7 kB	1.677,0 kB	[dosya listesi]
hppa (resmi olmayan port)	0.9.0-2+b1	956,9 kB	2.511,0 kB	[dosya listesi]
i386	0.9.0-2+b1	993,9 kB	2.336,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	0.9.0-2+b1	1.035,7 kB	4.198,0 kB	[dosya listesi]
m68k (resmi olmayan port)	0.9.0-2+b1	942,8 kB	2.340,0 kB	[dosya listesi]
mips64el	0.9.0-2+b1	904,4 kB	2.896,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	0.9.0-2+b1	944,9 kB	2.923,0 kB	[dosya listesi]
ppc64el	0.9.0-2+b1	952,1 kB	2.719,0 kB	[dosya listesi]
riscv64	0.9.0-2+b3	964,2 kB	1.968,0 kB	[dosya listesi]
s390x	0.9.0-2+b1	953,2 kB	2.395,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	0.9.0-2+b1	1.089,7 kB	2.334,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	0.9.0-2+b1	838,8 kB	3.122,0 kB	[dosya listesi]
x32 (resmi olmayan port)	0.9.0-2+b1	959,3 kB	2.215,0 kB	[dosya listesi]