Paket: examl (3.0.22-6 ve diğerleri)

[ Kaynak: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

examl ile İlgili Diğer Paketler

• dep: libc6 (>= 2.38) [alpha, ia64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [armel, armhf, hppa, i386, ia64, m68k, sh4, x32 değil]

  high performance message passing library -- shared library

• dep: mpi-default-bin [ia64 değil]

  Standard MPI runtime programs (metapackage)

• dep: openmpi-bin [ia64]

  high performance message passing library -- binaries

examl indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	3.0.22-6+b1	832,3 kB	1.921,0 kB	[dosya listesi]
amd64	3.0.22-6+b2	937,8 kB	6.019,0 kB	[dosya listesi]
arm64	3.0.22-6+b2	778,7 kB	1.665,0 kB	[dosya listesi]
armel	3.0.22-6+b1	797,3 kB	2.046,0 kB	[dosya listesi]
armhf	3.0.22-6+b1	786,3 kB	1.598,0 kB	[dosya listesi]
hppa (resmi olmayan port)	3.0.22-6+b1	813,1 kB	1.744,0 kB	[dosya listesi]
i386	3.0.22-6+b1	1.078,9 kB	7.013,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	3.0.22-5	955,5 kB	2.818,0 kB	[dosya listesi]
m68k (resmi olmayan port)	3.0.22-6+b1	763,6 kB	1.782,0 kB	[dosya listesi]
mips64el	3.0.22-6+b2	818,6 kB	1.813,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	3.0.22-6+b2	835,6 kB	1.921,0 kB	[dosya listesi]
ppc64el	3.0.22-6+b2	837,7 kB	1.793,0 kB	[dosya listesi]
riscv64	3.0.22-6+b2	835,6 kB	1.577,0 kB	[dosya listesi]
s390x	3.0.22-6+b2	826,1 kB	2.061,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	3.0.22-6+b1	888,6 kB	1.854,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	3.0.22-6+b2	816,1 kB	3.718,0 kB	[dosya listesi]
x32 (resmi olmayan port)	3.0.22-6+b1	781,9 kB	1.742,0 kB	[dosya listesi]