Paket: discosnp (1:2.6.2-3 ve diğerleri)

[ Kaynak: discosnp  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

discosnp ile İlgili Diğer Paketler

• dep: bc [m68k, sh4]

  GNU bc arbitrary precision calculator language

• dep: gatb-core [m68k, sh4 değil]

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.24) [sh4]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.29) [hppa]

  dep: libc6 (>= 2.34) [alpha, arm64, hppa, ia64, m68k, sh4 değil]

  dep: libc6 (>= 2.38) [arm64]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgatbcore3 (>= 1.4.2) [amd64]

  dynamic library of the Genome Analysis Toolbox

  dep: libgatbcore3 (>= 1.4.2+dfsg) [amd64, m68k, sh4 değil]

• dep: libgcc-s1 (>= 3.0) [hppa, ia64, m68k, sh4 değil]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:4.2) [sh4]

  Paket mevcut değil

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paket mevcut değil

• dep: libhdf5-103-1 [hppa]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [hppa, m68k, sh4 değil]

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [arm64, hppa, m68k, sh4 değil]

  dep: libstdc++6 (>= 14) [arm64]

  dep: libstdc++6 (>= 5.2) [m68k, sh4]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python [m68k, sh4]

  Paket mevcut değil

• dep: python3 [m68k, sh4 değil]

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.3.4) [m68k, sh4]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.6) [m68k, sh4 değil]

discosnp indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1:2.6.2-3+b1	1.407,7 kB	3.063,0 kB	[dosya listesi]
amd64	1:2.6.2-3+b1	1.421,7 kB	2.904,0 kB	[dosya listesi]
arm64	1:2.6.2-3+b2	1.408,3 kB	3.060,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1:2.6.2-1	1.416,6 kB	2.789,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1:2.6.2-3+b1	1.435,4 kB	3.315,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.2.6-2	121,2 kB	299,0 kB	[dosya listesi]
mips64el	1:2.6.2-3+b1	1.401,1 kB	3.121,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1:2.6.2-3+b1	1.425,6 kB	3.263,0 kB	[dosya listesi]
ppc64el	1:2.6.2-3+b1	1.426,6 kB	3.124,0 kB	[dosya listesi]
riscv64	1:2.6.2-3+b1	1.414,9 kB	2.772,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.2.6-2	148,7 kB	299,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1:2.6.2-3+b1	1.394,9 kB	7.048,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1:2.6.2-3+b1	1.405,4 kB	2.686,0 kB	[dosya listesi]