Paket: bio-rainbow (2.0.4+dfsg-2 ve diğerleri)

[ Kaynak: bio-rainbow  ]

clustering and assembling short reads for bioinformatics

Efficient tool for clustering and assembling short reads, especially for RAD.

Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.

bio-rainbow ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29) [alpha, arm64, ia64, loong64, riscv64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [arm64, riscv64]

  dep: libc6 (>= 2.36) [loong64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

bio-rainbow indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	2.0.4+dfsg-2	62,7 kB	210,0 kB	[dosya listesi]
amd64	2.0.4+dfsg-2	58,8 kB	186,0 kB	[dosya listesi]
arm64	2.0.4+dfsg-2+b2	58,3 kB	307,0 kB	[dosya listesi]
armel	2.0.4+dfsg-2	56,7 kB	179,0 kB	[dosya listesi]
armhf	2.0.4+dfsg-2	56,0 kB	143,0 kB	[dosya listesi]
hppa (resmi olmayan port)	2.0.4+dfsg-2	63,2 kB	194,0 kB	[dosya listesi]
i386	2.0.4+dfsg-2	63,9 kB	203,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	2.0.4+dfsg-2	75,4 kB	311,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	2.0.4+dfsg-2	59,6 kB	194,0 kB	[dosya listesi]
m68k (resmi olmayan port)	2.0.4+dfsg-2	56,1 kB	175,0 kB	[dosya listesi]
mips64el	2.0.4+dfsg-2	61,4 kB	209,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	2.0.4+dfsg-2	65,8 kB	306,0 kB	[dosya listesi]
ppc64el	2.0.4+dfsg-2	65,6 kB	306,0 kB	[dosya listesi]
riscv64	2.0.4+dfsg-2+b3	63,3 kB	163,0 kB	[dosya listesi]
s390x	2.0.4+dfsg-2	55,9 kB	194,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	2.0.4+dfsg-2	65,9 kB	167,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	2.0.4+dfsg-2	52,9 kB	181,0 kB	[dosya listesi]
x32 (resmi olmayan port)	2.0.4+dfsg-2	59,3 kB	183,0 kB	[dosya listesi]