Pakket: bio-rainbow (2.0.4+dfsg-2 en anderen)

Verwijzigingen voor bio-rainbow

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Het bronpakket bio-rainbow downloaden:

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Homepage [sourceforge.net]

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clustering and assembling short reads for bioinformatics

Efficient tool for clustering and assembling short reads, especially for RAD.

Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.

Andere aan bio-rainbow gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29) [niet alpha, arm64, ia64, loong64, riscv64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.31) [sh4]

dep: libc6 (>= 2.34) [arm64, riscv64]

dep: libc6 (>= 2.36) [loong64]
dep: libc6.1 (>= 2.29) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.31) [ia64]
dep: perl

Larry Wall's Practical Extraction and Report Language

bio-rainbow downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.0.4+dfsg-2	62,7 kB	210,0 kB	[overzicht]
amd64	2.0.4+dfsg-2	58,8 kB	186,0 kB	[overzicht]
arm64	2.0.4+dfsg-2+b2	58,3 kB	307,0 kB	[overzicht]
armel	2.0.4+dfsg-2	56,7 kB	179,0 kB	[overzicht]
armhf	2.0.4+dfsg-2	56,0 kB	143,0 kB	[overzicht]
hppa (unofficial port)	2.0.4+dfsg-2	63,2 kB	194,0 kB	[overzicht]
i386	2.0.4+dfsg-2	63,9 kB	203,0 kB	[overzicht]
ia64 (unofficial port)	2.0.4+dfsg-2	75,4 kB	311,0 kB	[overzicht]
loong64 (unofficial port)	2.0.4+dfsg-2	59,6 kB	194,0 kB	[overzicht]
m68k (unofficial port)	2.0.4+dfsg-2	56,1 kB	175,0 kB	[overzicht]
mips64el	2.0.4+dfsg-2	61,4 kB	209,0 kB	[overzicht]
ppc64 (unofficial port)	2.0.4+dfsg-2	65,8 kB	306,0 kB	[overzicht]
ppc64el	2.0.4+dfsg-2	65,6 kB	306,0 kB	[overzicht]
riscv64	2.0.4+dfsg-2+b3	63,3 kB	163,0 kB	[overzicht]
s390x	2.0.4+dfsg-2	55,9 kB	194,0 kB	[overzicht]
sh4 (unofficial port)	2.0.4+dfsg-2	65,9 kB	167,0 kB	[overzicht]
sparc64 (unofficial port)	2.0.4+dfsg-2	52,9 kB	181,0 kB	[overzicht]
x32 (unofficial port)	2.0.4+dfsg-2	59,3 kB	183,0 kB	[overzicht]