Paket: bandage (0.8.1-1)

[ Kaynak: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly and will be maintained by the Debian Med team.

Etiketler: Arayüz Araç Takımı: Qt

bandage ile İlgili Diğer Paketler

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:4.0) [arm64 değil]

  GCC support library

  dep: libgcc1 (>= 1:4.2) [arm64]

• dep: libgl1 [armhf değil]

  Vendor neutral GL dispatch library -- legacy GL support

• dep: libgles2 [armhf]

  Vendor neutral GL dispatch library -- GLESv2 support
  ayrıca şunun tarafından sağlanan bir sanal paket mali-t62x-fbdev-driver, mali-t62x-wayland-driver, mali-t62x-x11-driver, mali-t76x-fbdev-driver, mali-t76x-wayland-driver, mali-t76x-x11-driver

• dep: libqt5core5a (>= 5.11.0~rc1) [amd64, i386]

  Qt 5 core module

  dep: libqt5core5a (>= 5.5.0) [arm64, armhf]

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.11.0~rc1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

bandage indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	925,1 kB	2.236,0 kB	[dosya listesi]
arm64	860,8 kB	2.134,0 kB	[dosya listesi]
armhf	837,9 kB	1.564,0 kB	[dosya listesi]
i386	972,7 kB	2.320,0 kB	[dosya listesi]