Paket: bandage (0.8.1-4)

[ Kaynak: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Etiketler: Arayüz Araç Takımı: Qt

bandage ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 4.0) [arm64, mips64el değil]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [arm64, mips64el]

• dep: libqt5core5a (>= 5.14.1)

  Qt 5 core module

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

  ya da libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.11.0~rc1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

bandage indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	918,9 kB	2.140,0 kB	[dosya listesi]
arm64	849,8 kB	2.026,0 kB	[dosya listesi]
armel	841,1 kB	1.957,0 kB	[dosya listesi]
armhf	844,1 kB	1.569,0 kB	[dosya listesi]
i386	953,4 kB	2.168,0 kB	[dosya listesi]
mips64el	869,4 kB	2.661,0 kB	[dosya listesi]
mipsel	873,8 kB	2.569,0 kB	[dosya listesi]
ppc64el	914,5 kB	2.527,0 kB	[dosya listesi]
s390x	855,3 kB	2.195,0 kB	[dosya listesi]