Paket: gmap (2024-11-20+ds-2) [debports]

[ Kaynak:  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

gmap ile İlgili Diğer Paketler

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6.1 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

gmap indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	5.233,2 kB	44.708,0 kB	[dosya listesi]