Pakket: gmap (2024-08-20+ds-1) [debports]

[ Bron:  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	5.273,1 kB	44.635,0 kB	[overzicht]