套件：gmap（2024-11-20+ds-1） [debports]
spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of
* known splice sites and identify novel splice sites. * known single-nucleotide polymorphisms (SNPs).GSNAP can align bisulfite-treated DNA.
其他與 gmap 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6.1 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: zlib1g (>= 1:1.2.6)
- 壓縮函式庫 - 跑程式時用(runtime)