Paket: unicycler (0.5.1+dfsg-2)

[ Kaynak: unicycler  ]

Deneysel paket

Uyarı: Bu paket deneysel dağıtımdan geliyor. Bu, paketin kararsız veya hatalı olabileceği hatta veri kaybına sebep olabileceği anlamına gelmektedir. Lütfen kullanmadan önce değişim günlüğüne ve muhtemel diğer belgelendirmeye danıştığınızdan emin olun.

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

unicycler ile İlgili Diğer Paketler

• dep: bcftools

  genomic variant calling and manipulation of VCF/BCF files

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: miniasm

  ultrafast de novo assembler for long noisy DNA sequencing reads

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: pilon

  automated genome assembly improvement and variant detection tool

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3~)

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: racon

  consensus module for raw de novo DNA assembly of long uncorrected reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: spades (>= 3.14)

  genome assembler for single-cell and isolates data sets

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: unicycler-data

  hybrid assembly pipeline for bacterial genomes (data package)

unicycler indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	878,8 kB	3.213,0 kB	[dosya listesi]