[ 源代码： unicycler ]
软件包：unicycler（0.5.1+dfsg-2）
unicycler 的相关链接
Debian 的资源：
下载源码包 unicycler：
- [unicycler_0.5.1+dfsg-2.dsc]
- [unicycler_0.5.1+dfsg.orig.tar.xz]
- [unicycler_0.5.1+dfsg-2.debian.tar.xz]
维护小组：
外部的资源：
- 主页 [github.com]
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hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
其他与 unicycler 有关的软件包
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- dep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: miniasm
- ultrafast de novo assembler for long noisy DNA sequencing reads
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: pilon
- automated genome assembly improvement and variant detection tool
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-setuptools
- Python3 Distutils Enhancements
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- dep: racon
- consensus module for raw de novo DNA assembly of long uncorrected reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: spades (>= 3.14)
- genome assembler for single-cell and isolates data sets
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: unicycler-data
- hybrid assembly pipeline for bacterial genomes (data package)