Paket: r-cran-alakazam (1.3.0-2~0exp0)

[ Kaynak: r-cran-alakazam  ]

Deneysel paket

Uyarı: Bu paket deneysel dağıtımdan geliyor. Bu, paketin kararsız veya hatalı olabileceği hatta veri kaybına sebep olabileceği anlamına gelmektedir. Lütfen kullanmadan önce değişim günlüğüne ve muhtemel diğer belgelendirmeye danıştığınızdan emin olun.

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

r-cran-alakazam ile İlgili Diğer Paketler

• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [alpha, riscv64 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

• dep: libstdc++6 (>= 13.1) [alpha değil]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [alpha]

• dep: r-api-4.0

  Paket mevcut değil

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr (>= 1.4.1)

  GNU R AIRR data representation reference library

• dep: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-dplyr (>= 1.0)

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2 (>= 3.4.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.5.0)

  GNU R network analysis and visualization

• dep: r-cran-matrix (>= 1.3-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-progress

  GNU R terminal progress bars

• dep: r-cran-rcpp (>= 0.12.12)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-seqinr

  GNU R biological sequences retrieval and analysis

• dep: r-cran-stringi

  GNU R character string processing facilities

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0)

  GNU R package to easily tidy data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

r-cran-alakazam indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	2.359,7 kB	2.914,0 kB	[dosya listesi]
amd64	2.364,9 kB	2.851,0 kB	[dosya listesi]
arm64	2.359,3 kB	2.851,0 kB	[dosya listesi]
mips64el	2.358,1 kB	2.921,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	2.363,5 kB	2.917,0 kB	[dosya listesi]
ppc64el	2.364,3 kB	2.915,0 kB	[dosya listesi]
riscv64	2.365,1 kB	2.826,0 kB	[dosya listesi]
s390x	2.363,2 kB	2.847,0 kB	[dosya listesi]