Paket: r-cran-ape (5.8-1 ve diğerleri)

[ Kaynak: r-cran-ape  ]

GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

Etiketler: Yazılım Geliştirme: GNU R Geliştirme, Alan: İstatistikler, Geliştirildiği dil: GNU R

r-cran-ape ile İlgili Diğer Paketler

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  ya da libblas.so.3

  sanal paketi sağlayan libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.29) [alpha, ia64, riscv64, sh4 değil]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  ya da liblapack.so.3

  sanal paketi sağlayan libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [arm64, ia64 değil]

  dep: libstdc++6 (>= 14) [arm64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  sanal paketi sağlayan r-base-core

• dep: r-base-core (>= 4.3.0-1) [ia64]

  GNU R core of statistical computation and graphics system

• dep: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-nlme

  GNU R package for (non-)linear mixed effects models

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• rec: r-cran-phangorn

  GNU R package for phylogenetic analysis

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: muscle

  Multiple alignment program of protein sequences

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: r-cran-expm

  GNU R Computation of the matrix exponential and related quantities

• sug: r-cran-gee

  Generalized Estimation Equation Solver

• sug: r-cran-igraph

  GNU R network analysis and visualization

• sug: t-coffee

  Multiple Sequence Alignment

r-cran-ape indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	5.8-1	2.852,3 kB	3.744,0 kB	[dosya listesi]
amd64	5.8-1	2.851,6 kB	3.699,0 kB	[dosya listesi]
arm64	5.8-1+b1	2.842,6 kB	3.746,0 kB	[dosya listesi]
armel	5.8-1	2.836,2 kB	3.665,0 kB	[dosya listesi]
armhf	5.8-1	2.831,1 kB	3.589,0 kB	[dosya listesi]
hppa (resmi olmayan port)	5.8-1	2.848,5 kB	3.700,0 kB	[dosya listesi]
i386	5.8-1	2.861,7 kB	3.736,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	5.7-1-1	2.841,9 kB	3.965,0 kB	[dosya listesi]
m68k (resmi olmayan port)	5.8-1	2.831,6 kB	3.644,0 kB	[dosya listesi]
mips64el	5.8-1	2.838,7 kB	3.758,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	5.8-1	2.860,2 kB	3.811,0 kB	[dosya listesi]
ppc64el	5.8-1	2.858,0 kB	3.743,0 kB	[dosya listesi]
riscv64	5.8-1	2.850,4 kB	3.639,0 kB	[dosya listesi]
s390x	5.8-1	2.859,2 kB	3.727,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	5.8-1	2.859,7 kB	3.676,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	5.8-1	2.833,6 kB	4.455,0 kB	[dosya listesi]
x32 (resmi olmayan port)	5.8-1	2.850,8 kB	3.669,0 kB	[dosya listesi]