Pakket: r-cran-alakazam (1.3.0-2~0exp0)

[ Bron: r-cran-alakazam  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Andere aan r-cran-alakazam gerelateerde pakketten

• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [niet alpha, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

• dep: libstdc++6 (>= 13.1) [niet alpha]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [alpha]

• dep: r-api-4.0

  Pakket niet beschikbaar

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr (>= 1.4.1)

  GNU R AIRR data representation reference library

• dep: r-cran-ape

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• dep: r-cran-dplyr (>= 1.0)

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2 (>= 3.4.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.5.0)

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• dep: r-cran-matrix (>= 1.3-0)

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• dep: r-cran-progress

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• dep: r-cran-rcpp (>= 0.12.12)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-readr

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• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

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• dep: r-cran-seqinr

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• dep: r-cran-stringi

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• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0)

  GNU R package to easily tidy data

• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

  GNU R testsuite

r-cran-alakazam downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.359,7 kB	2.914,0 kB	[overzicht]
amd64	2.364,9 kB	2.851,0 kB	[overzicht]
arm64	2.359,3 kB	2.851,0 kB	[overzicht]
mips64el	2.358,1 kB	2.921,0 kB	[overzicht]
ppc64 (unofficial port)	2.363,5 kB	2.917,0 kB	[overzicht]
ppc64el	2.364,3 kB	2.915,0 kB	[overzicht]
riscv64	2.365,1 kB	2.826,0 kB	[overzicht]
s390x	2.363,2 kB	2.847,0 kB	[overzicht]