软件包：r-cran-alakazam（1.3.0-2~0exp0）

[ 源代码： r-cran-alakazam  ]

试制（Experimental）软件包

警告：这个软件包来自于 experimental 发行版。这表示它很有可能表现出不稳定或者出现 bug ，甚至是导致资料损失。请务必在使用之前查阅 changelog 以及其他潜在的文档。

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

其他与 r-cran-alakazam 有关的软件包

• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [除 alpha, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

• dep: libstdc++6 (>= 13.1) [除 alpha]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 14) [alpha]

• dep: r-api-4.0

  软件包暂时不可用

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr (>= 1.4.1)

  GNU R AIRR data representation reference library

• dep: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-dplyr (>= 1.0)

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2 (>= 3.4.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.5.0)

  GNU R network analysis and visualization

• dep: r-cran-matrix (>= 1.3-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-progress

  GNU R terminal progress bars

• dep: r-cran-rcpp (>= 0.12.12)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-seqinr

  GNU R biological sequences retrieval and analysis

• dep: r-cran-stringi

  GNU R character string processing facilities

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0)

  GNU R package to easily tidy data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

下载 r-cran-alakazam

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
alpha （非官方移植版）	2,359.7 kB	2,914.0 kB	[文件列表]
amd64	2,364.9 kB	2,851.0 kB	[文件列表]
arm64	2,359.3 kB	2,851.0 kB	[文件列表]
mips64el	2,358.1 kB	2,921.0 kB	[文件列表]
ppc64 （非官方移植版）	2,363.5 kB	2,917.0 kB	[文件列表]
ppc64el	2,364.3 kB	2,915.0 kB	[文件列表]
riscv64	2,365.1 kB	2,826.0 kB	[文件列表]
s390x	2,363.2 kB	2,847.0 kB	[文件列表]