Paket: sga (0.10.15-7 och andra)

[ Källkod: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Andra paket besläktade med sga

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [ej riscv64]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 13.1) [riscv64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• rec: abyss

  de novo, parallel, sequence assembler for short reads

Hämta sga

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.10.15-7+b1	812,5 kbyte	2.432,0 kbyte	[filförteckning]
arm64	0.10.15-7+b1	580,5 kbyte	1.792,0 kbyte	[filförteckning]
armel	0.10.15-7+b1	564,3 kbyte	1.727,0 kbyte	[filförteckning]
armhf	0.10.15-7+b1	582,9 kbyte	1.279,0 kbyte	[filförteckning]
i386	0.10.15-7+b1	876,3 kbyte	2.607,0 kbyte	[filförteckning]
mips64el	0.10.15-7+b1	745,3 kbyte	3.062,0 kbyte	[filförteckning]
ppc64el	0.10.15-7+b1	692,6 kbyte	2.304,0 kbyte	[filförteckning]
riscv64	0.10.15-7+b1	663,5 kbyte	1.496,0 kbyte	[filförteckning]