Paket: libjellyfish-perl (2.3.0-15 och andra)

[ Källkod: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Märken: Software Development: Perl Development, Bibliotek, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Andra paket besläktade med libjellyfish-perl

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: perl (>= 5.36.0-7)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.36.0

  virtuellt paket som tillhandahålls av perl-base

Hämta libjellyfish-perl

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.3.0-15+b3	53,0 kbyte	172,0 kbyte	[filförteckning]
arm64	2.3.0-15+b3	48,4 kbyte	228,0 kbyte	[filförteckning]
armel	2.3.0-15+b3	54,4 kbyte	174,0 kbyte	[filförteckning]
armhf	2.3.0-15+b3	55,2 kbyte	138,0 kbyte	[filförteckning]
i386	2.3.0-15+b3	62,1 kbyte	186,0 kbyte	[filförteckning]
mips64el	2.3.0-15+b3	47,5 kbyte	234,0 kbyte	[filförteckning]
ppc64el	2.3.0-15+b3	53,3 kbyte	228,0 kbyte	[filförteckning]