Pakket: samtools (1.20-3)

[ Bron: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andere aan samtools gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libhts3t64 (>= 1.20~)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf, i386]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386]

• sug: cwltool

  Common Workflow Language reference implementation

samtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	637,6 kB	1.409,0 kB	[overzicht]
arm64	609,3 kB	1.673,0 kB	[overzicht]
armel	601,7 kB	1.330,0 kB	[overzicht]
armhf	605,0 kB	1.146,0 kB	[overzicht]
i386	672,3 kB	1.538,0 kB	[overzicht]
mips64el	615,2 kB	1.824,0 kB	[overzicht]
ppc64el	662,7 kB	1.929,0 kB	[overzicht]
riscv64	647,5 kB	1.281,0 kB	[overzicht]
s390x	643,8 kB	1.485,0 kB	[overzicht]