Pakket: examl (3.0.22-5)

[ Bron: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Andere aan examl gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: openmpi-bin

  high performance message passing library -- binaries

examl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	931,6 kB	5.969,0 kB	[overzicht]
arm64	780,5 kB	1.663,0 kB	[overzicht]
armel	796,9 kB	1.872,0 kB	[overzicht]
armhf	785,1 kB	1.520,0 kB	[overzicht]
i386	1.078,8 kB	7.035,0 kB	[overzicht]
mips64el	816,6 kB	1.811,0 kB	[overzicht]
ppc64el	845,9 kB	1.919,0 kB	[overzicht]
s390x	818,0 kB	1.995,0 kB	[overzicht]