Paket: examl (3.0.22-6 und andere)

[ Quellcode: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Andere Pakete mit Bezug zu examl

• dep: libc6 (>= 2.38)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libmpich12 [armel, armhf, i386]

  Shared libraries for MPICH

• dep: libopenmpi40 (>= 5.0.6) [nicht armel, armhf, i386]

  Leistungsstarke Message-Passing-Bibliothek - Laufzeitbibliotheken

• dep: mpi-default-bin

  Standard-MPI-Laufzeitdateien (Metapaket)

examl herunterladen

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Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	3.0.22-6+b2	937,8 kB	6.019,0 kB	[Liste der Dateien]
arm64	3.0.22-6+b2	778,7 kB	1.665,0 kB	[Liste der Dateien]
armel	3.0.22-6+b1	797,3 kB	2.046,0 kB	[Liste der Dateien]
armhf	3.0.22-6+b1	786,3 kB	1.598,0 kB	[Liste der Dateien]
i386	3.0.22-6+b1	1.078,9 kB	7.013,0 kB	[Liste der Dateien]
mips64el	3.0.22-6+b2	818,6 kB	1.813,0 kB	[Liste der Dateien]
ppc64el	3.0.22-6+b2	837,7 kB	1.793,0 kB	[Liste der Dateien]
riscv64	3.0.22-6+b2	835,6 kB	1.577,0 kB	[Liste der Dateien]
s390x	3.0.22-6+b2	826,1 kB	2.061,0 kB	[Liste der Dateien]