Pakiet: examl (3.0.22-6 i inne)

[ Pakiet źródłowy: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Inne pakiety związane z examl

• dep: libc6 (>= 2.38)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libmpich12 [armel, armhf, i386]

  Shared libraries for MPICH

• dep: libopenmpi40 (>= 5.0.7) [nie armel, armhf, i386]

  high performance message passing library -- shared library

• dep: mpi-default-bin

  Standard MPI runtime programs (metapackage)

Pobieranie examl

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Architektura	Wersja	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	3.0.22-6+b3	959,8 KiB	6 371,0 KiB	[lista plików]
arm64	3.0.22-6+b3	778,9 KiB	1 665,0 KiB	[lista plików]
armel	3.0.22-6+b2	797,6 KiB	2 046,0 KiB	[lista plików]
armhf	3.0.22-6+b2	785,0 KiB	1 598,0 KiB	[lista plików]
i386	3.0.22-6+b2	1 094,5 KiB	7 369,0 KiB	[lista plików]
mips64el	3.0.22-6+b3	819,7 KiB	1 813,0 KiB	[lista plików]
ppc64el	3.0.22-6+b3	836,8 KiB	1 793,0 KiB	[lista plików]
riscv64	3.0.22-6+b3	835,0 KiB	1 577,0 KiB	[lista plików]
s390x	3.0.22-6+b3	826,1 KiB	2 061,0 KiB	[lista plików]