Paket: r-bioc-rtracklayer (1.66.0-2 och andra)

[ Källkod: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Andra paket besläktade med r-bioc-rtracklayer

• dep: libc6 (>= 2.15) [m68k]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.28) [sparc64]

  dep: libc6 (>= 2.34) [hppa, x32]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcurl4t64 (>= 7.16.2) [ej hppa, ia64, m68k, sh4, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libssl1.1 (>= 1.1.0) [m68k]

  Paketet inte tillgängligt

• dep: libssl3t64 (>= 3.0.0) [ej hppa, ia64, m68k, sh4, sparc64, x32]

  Secure Sockets Layer toolkit - shared libraries

• dep: r-api-3.4 [m68k]

  Paketet inte tillgängligt

• dep: r-api-3.5 [sparc64]

  Paketet inte tillgängligt

• dep: r-api-4.0 [ej m68k, sparc64]

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.20 [ej hppa, ia64, m68k, sh4, sparc64, x32]

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketet inte tillgängligt

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.13.8) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [sparc64]

  dep: r-bioc-biocgenerics (>= 0.35.3) [ej m68k, sparc64]

• dep: r-bioc-biocio [ej m68k, sparc64]

  standard input and output for Bioconductor packages

• dep: r-bioc-biostrings (>= 2.43.7) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [ej m68k]

• dep: r-bioc-genomeinfodb (>= 1.15.2) [ej m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.3.14) [m68k]

• dep: r-bioc-genomicalignments (>= 1.15.6) [ej m68k]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.20) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.37.2) [ej m68k, sparc64]

• dep: r-bioc-iranges (>= 2.11.12) [m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.13.13) [ej m68k]

• dep: r-bioc-rsamtools (>= 1.17.8) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [ej m68k]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.19.22) [sparc64]

  dep: r-bioc-s4vectors (>= 0.23.18) [ej m68k, sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [ej m68k]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.9.4) [m68k]

• dep: r-bioc-zlibbioc [ej m68k]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-curl [ej hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R modern and flexible web client for R

• dep: r-cran-httr [ej hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rcurl (>= 1.4-2) [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-restfulr (>= 0.0.13) [ej m68k, sparc64]

  GNU R interface to RESTful web wervices

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• sug: r-bioc-bsgenome (>= 1.33.4)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db [ej m68k, sparc64]

  genome-wide annotation for Human

• sug: r-cran-runit

  GNU R package providing unit testing framework

Hämta r-bioc-rtracklayer

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.66.0-2	5.088,7 kbyte	6.771,0 kbyte	[filförteckning]
amd64	1.66.0-2	5.090,8 kbyte	6.666,0 kbyte	[filförteckning]
arm64	1.66.0-2	5.080,4 kbyte	6.706,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.62.0-1	4.970,1 kbyte	6.722,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.62.0-1	5.004,6 kbyte	7.092,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.38.0-1	1.824,3 kbyte	2.765,0 kbyte	[filförteckning]
mips64el	1.66.0-2	5.077,5 kbyte	6.736,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.66.0-2	5.104,6 kbyte	6.909,0 kbyte	[filförteckning]
ppc64el	1.66.0-2	5.103,0 kbyte	6.834,0 kbyte	[filförteckning]
riscv64	1.66.0-2	5.088,9 kbyte	6.618,0 kbyte	[filförteckning]
s390x	1.66.0-2	5.089,5 kbyte	6.698,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.62.0-1	4.982,8 kbyte	6.647,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.42.1-2	2.356,6 kbyte	3.783,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.58.0-1	4.983,9 kbyte	6.659,0 kbyte	[filförteckning]