Pakket: r-cran-alakazam (1.2.1-1)

[ Bron: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

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• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [niet amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

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• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-base-core (>= 4.2.1-2)

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• dep: r-bioc-biostrings (>= 2.56.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments (>= 1.24.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges (>= 2.22.2)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr (>= 1.3)

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• dep: r-cran-ape

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• dep: r-cran-dplyr (>= 1.0)

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r-cran-alakazam downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.352,2 kB	2.843,0 kB	[overzicht]
arm64	2.347,5 kB	2.855,0 kB	[overzicht]
armel	2.347,7 kB	2.854,0 kB	[overzicht]
armhf	2.348,7 kB	2.854,0 kB	[overzicht]
i386	2.354,9 kB	2.845,0 kB	[overzicht]
mips64el	2.346,8 kB	2.861,0 kB	[overzicht]
mipsel	2.346,6 kB	2.857,0 kB	[overzicht]
ppc64el	2.351,8 kB	2.919,0 kB	[overzicht]
s390x	2.349,0 kB	2.839,0 kB	[overzicht]